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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
17
RRBS
11
WGBS
3
pCHi-C
Assay category
28
DNA methylation
17
3D chromatin structure
Date released
15
July, 2019
10
March, 2020
7
November, 2018
6
August, 2017
3
October, 2022
2
August, 2021
2
November, 2019
2
October, 2019
1
August, 2018
Available data
3145
bam
2916
bigWig
1612
bed narrowPeak
1418
tsv
1331
fastq
948
bigBed narrowPeak
392
tagAlign
292
bed broadPeak
255
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
48
Homo sapiens
Biosample type
25
tissue
13
primary cell
7
in vitro differentiated cells
3
cell line
Organ
13
pancreas
11
epithelium
heart
6
musculature of body
5
liver
4
connective tissue
4
kidney
4
vasculature
3
adipose tissue
3
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
45
AMP
3
HPAP
Genome assembly (visualization)
35
hg19
11
GRCh38
Lab
43
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
3
audit script error
organ_slims!
embryo
heart
BIOSAMPLE
ASSAY
48 results
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Clear Filters
Hi-C
RRBS
WGBS
pCHi-C
tissue
pancreas
1
1
2
islet of Langerhans
2
1
adipose tissue
2
aorta
1
1
body of pancreas
2
+ See 8 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 8 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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