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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
458
total RNA-seq
6
single cell RNA-seq
3
pCHi-C
3
small RNA-seq
2
Hi-C
Assay category
467
Transcription
2
3D chromatin structure
Date released
438
February, 2021
17
July, 2019
6
August, 2021
5
February, 2020
5
March, 2020
1
August, 2018
Available data
627
bam
580
bigWig
469
tsv
146
bed narrowPeak
93
bigBed narrowPeak
50
fastq
20
bed broadPeak
19
bed bed3+
19
bigBed broadPeak
14
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
hic
2
hdf5
1
tar
Organism
472
Homo sapiens
Biosample type
414
tissue
52
cell line
5
primary cell
1
in vitro differentiated cells
Organ
479
connective tissue
424
pancreas
402
adipose tissue
176
liver
171
heart
161
epithelium
70
blood vessel
70
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
472
AMP
Genome assembly (visualization)
458
hg19
456
GRCh38
Lab
472
AMP-T2D consortium
BIOSAMPLE
ASSAY
472 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
tissue
adipose tissue
381
1
subcutaneous adipose tissue
7
1
aorta
1
4
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
52
primary cell
mesenchymal stem cell of adipose
1
1
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
white fat cell
1
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