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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
6
single cell RNA-seq
3
pCHi-C
2
Hi-C
Assay category
67
Transcription
2
3D chromatin structure
Date released
52
February, 2021
6
August, 2021
6
March, 2020
5
July, 2019
3
February, 2020
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
70
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
72
Homo sapiens
Biosample type
52
cell line
17
tissue
3
primary cell
Organ
479
connective tissue
424
pancreas
402
adipose tissue
176
liver
171
heart
161
epithelium
70
blood vessel
70
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
72
AMP
Genome assembly (visualization)
60
hg19
58
GRCh38
Lab
72
AMP-T2D consortium
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
aorta
1
4
1
1
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
coronary artery
1
+ See 3 more…
primary cell
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
smooth muscle cell of the coronary artery
1
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