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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
14
Hi-C
3
pCHi-C
Assay category
64
DNA accessibility
14
3D chromatin structure
Date released
66
August, 2021
10
March, 2020
3
October, 2019
1
August, 2018
1
November, 2019
Available data
2921
bam
2741
bigWig
1554
bed narrowPeak
1377
tsv
1101
fastq
904
bigBed narrowPeak
385
tagAlign
295
bed broadPeak
258
bigBed broadPeak
247
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
17
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
81
Homo sapiens
Biosample type
73
tissue
7
in vitro differentiated cells
1
cell line
Organ
64
kidney
7
pancreas
epithelium
3
heart
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
81
AMP
Genome assembly (visualization)
64
GRCh38
15
hg19
Lab
64
Katalin Susztak, Upenn
15
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
81 results
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ATAC-seq
Hi-C
pCHi-C
tissue
kidney
64
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
See all biosamples
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