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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
11
Hi-C
3
pCHi-C
Assay category
64
DNA accessibility
11
3D chromatin structure
Date released
65
August, 2021
9
March, 2020
3
October, 2019
1
August, 2018
Available data
2518
bam
2391
bigWig
1470
bed narrowPeak
1114
tsv
881
fastq
868
bigBed narrowPeak
373
tagAlign
284
bed broadPeak
261
bigBed broadPeak
231
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
14
bedpe bed3+
13
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
tagAlign bed3+
1
vcf
Organism
78
Homo sapiens
Biosample type
70
tissue
7
in vitro differentiated cells
1
cell line
Organ
64
kidney
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
78
AMP
Genome assembly (visualization)
64
GRCh38
13
hg19
Lab
64
Katalin Susztak, Upenn
13
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
gonad
pancreas
vasculature
BIOSAMPLE
ASSAY
78 results
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ATAC-seq
Hi-C
pCHi-C
tissue
kidney
64
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
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