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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
1
pCHi-C
Assay category
10
3D chromatin structure
Date released
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
Available data
2960
bam
2795
bigWig
1555
tsv
1463
bed narrowPeak
1010
fastq
730
bigBed narrowPeak
320
tagAlign
272
bed bed3+
252
bed broadPeak
221
bigBed broadPeak
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
zippedFastqFolder
13
hic
12
bed bed3
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
11
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
3
tissue
2
cell line
Organ
6
pancreas
4
epithelium
1
adipose tissue
1
connective tissue
1
heart
1
liver
Project
8
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
March, 2020
May, 2022
November, 2017
BIOSAMPLE
ASSAY
11 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
heart
1
cell line
EndoC_BH1
1
HepG2
1
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