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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
2
pCHi-C
Assay category
11
3D chromatin structure
Date released
10
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
0
March, 2019
Available data
43
tsv
19
bigWig
16
bam
13
bedpe bed3+
12
hic
3
bed narrowPeak
3
cool
2
ibed
1
bed broadPeak
1
bedpe
1
fastq
1
txt
Organism
13
Homo sapiens
Biosample type
6
tissue
4
in vitro differentiated cells
3
primary cell
Organ
4
epithelium
4
pancreas
2
blood vessel
2
heart
2
musculature of body
vasculature
1
liver
1
vein
Project
10
AMP
3
HPAP
Genome assembly (visualization)
13
hg19
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
organ_slims!
vasculature
BIOSAMPLE
ASSAY
13 results
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Hi-C
pCHi-C
tissue
psoas muscle
2
heart left ventricle
1
heart right ventricle
1
liver
1
pancreas
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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