Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15Hi-C
  • 3pCHi-C
Assay category
  • 153D chromatin structure
Date released
  • 11March, 2020
  • 3October, 2019
  • 2August, 2021
  • 1August, 2018
  • 1November, 2019
Available data
  • 3075bam
  • 2868bigWig
  • 1666bed narrowPeak
  • 1444tsv
  • 1101fastq
  • 966bigBed narrowPeak
  • 391tagAlign
  • 300bed broadPeak
  • 263bigBed broadPeak
  • 252bed bed3+
  • 161txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 18Homo sapiens
Biosample type
  • 10tissue
  • 7in vitro differentiated cells
  • 1cell line
Organ
  • 7pancreas
  • epithelium
  • 3heart
  • 2blood vessel
  • 2liver
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1connective tissue
  • 1vein
Project
  • 18AMP
Genome assembly (visualization)
  • 16hg19
Lab
  • 16AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 6inconsistent ontology term
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

18 results

search-icontable-tab-icon
Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
cardiac precursors (cardiac muscle cell)1
white fat cell1
cell line
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego