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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 17Hi-C
  • 3pCHi-C
Assay category
  • 173D chromatin structure
Date released
  • 10March, 2020
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 2October, 2019
  • 1August, 2018
Available data
  • 3181bam
  • 2945bigWig
  • 1626bed narrowPeak
  • 1432tsv
  • 1358fastq
  • 948bigBed narrowPeak
  • 392tagAlign
  • 292bed broadPeak
  • 255bigBed broadPeak
  • 243bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 20bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 20Homo sapiens
Biosample type
  • 7in vitro differentiated cells
  • 7tissue
  • 4primary cell
  • 2cell line
Organ
  • 7pancreas
  • 5epithelium
  • heart
  • 2blood vessel
  • 2liver
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1connective tissue
  • 1vein
Project
  • 17AMP
  • 3HPAP
Genome assembly (visualization)
  • 18hg19
Lab
  • 15AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
Audit category:
  • 7inconsistent ontology term
  • 3audit script error
organ_slims!
  • heart
BIOSAMPLE
ASSAY

20 results

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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
cardiac precursors (cardiac muscle cell)1
white fat cell1
tissue
islet of Langerhans2
psoas muscle2
aorta1
liver1
pancreas1
primary cell
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
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