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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 13Hi-C
  • 3pCHi-C
Assay category
  • 133D chromatin structure
Date released
  • 11March, 2020
  • 3October, 2019
  • 1August, 2018
  • 1August, 2021
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 16Homo sapiens
Biosample type
  • 7in vitro differentiated cells
  • 7tissue
  • 1cell line
  • 1primary cell
Organ
  • pancreas
  • 5epithelium
  • 3heart
  • 2blood vessel
  • 2liver
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1connective tissue
  • 1vein
Project
  • 16AMP
Genome assembly (visualization)
  • 15hg19
Lab
  • 15AMP-T2D consortium
  • 1Bing Ren, UCSD
Audit category:
  • 6inconsistent ontology term
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

16 results

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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
cardiac precursors (cardiac muscle cell)1
white fat cell1
tissue
psoas muscle2
aorta1
heart1
heart left ventricle1
heart right ventricle1
cell line
HepG21
primary cell
endothelial cell of umbilical vein1
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