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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
Assay category
5
3D chromatin structure
Date released
3
October, 2022
1
March, 2020
1
November, 2019
Available data
359
bam
332
bigWig
257
fastq
178
bed narrowPeak
161
tsv
102
bigBed narrowPeak
80
zippedFastqFolder
24
bed broadPeak
24
bigBed broadPeak
23
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
0
nerve
0
skeleton
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
1
inconsistent ontology term
organ_slims!
bone element
BIOSAMPLE
ASSAY
5 results
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Hi-C
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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