Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 13Hi-C
  • 3pCHi-C
Assay category
  • 133D chromatin structure
Date released
  • 10March, 2020
  • 2November, 2019
  • 2October, 2019
  • 1August, 2018
  • 1August, 2021
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 16Homo sapiens
Biosample type
  • 7in vitro differentiated cells
  • 7tissue
  • 2cell line
Organ
  • 2heart
  • 2liver
  • 2musculature of body
  • 2pancreas
  • 1adipose tissue
  • 1blood vessel
  • 1connective tissue
  • 1epithelium
  • 1vasculature
Project
  • 16AMP
Genome assembly (visualization)
  • 15hg19
Lab
  • 15AMP-T2D consortium
  • 1Bing Ren, UCSD
Audit category:
  • 7inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

16 results

search-icontable-tab-icon
Clear Filters
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)21
lymphocyte of B lineage (iPSC)11
cardiac precursors (cardiac muscle cell)1
white fat cell1
tissue
psoas muscle2
aorta1
heart left ventricle1
heart right ventricle1
islet of Langerhans1
cell line
EndoC_BH11
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego