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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 16Hi-C
  • 1pCHi-C
Assay category
  • 163D chromatin structure
Date released
  • 8March, 2020
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 1August, 2018
  • 1October, 2019
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 17Homo sapiens
Biosample type
  • 10tissue
  • 4primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 7pancreas
  • 5epithelium
  • 3heart
  • 2blood vessel
  • 2liver
  • 2musculature of body
  • 2vasculature
  • 1adipose tissue
  • 1connective tissue
  • 1vein
Project
  • 14AMP
  • 3HPAP
Genome assembly (visualization)
  • 15hg19
Lab
  • 12AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
Audit category:
  • 3audit script error
  • 1inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

17 results

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Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
primary cell
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
in vitro differentiated cells
white fat cell1
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