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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
1
pCHi-C
Assay category
16
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
1
October, 2019
Available data
2716
bam
2558
bigWig
1531
tsv
1262
bed narrowPeak
857
fastq
553
bigBed narrowPeak
372
tagAlign
234
bed bed3+
223
bed broadPeak
186
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
19
hic
17
bedpe bed3+
16
bed bedMethyl
16
bigBed bedMethyl
11
bed bed3
8
csv
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
10
tissue
4
primary cell
2
cell line
1
in vitro differentiated cells
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
14
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
17 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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