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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
8
WGBS
Assay category
23
DNA methylation
Date released
23
July, 2019
Available data
3316
bam
3122
bigWig
1708
bed narrowPeak
1598
tsv
fastq
997
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
23
Homo sapiens
Biosample type
14
tissue
9
primary cell
Organ
8
heart
6
epithelium
4
kidney
2
brain
2
musculature of body
2
pancreas
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
limb
1
liver
1
pericardium
Project
23
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
lab.title!
Katalin Susztak, Upenn
month_released!
October, 2018
BIOSAMPLE
ASSAY
23 results
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RRBS
WGBS
tissue
heart left ventricle
1
2
heart right ventricle
2
aorta
1
brain
1
heart
1
+ See 6 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
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