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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
75
ChIP-seq
19
RRBS
16
WGBS
Assay category
197
DNA accessibility
75
DNA binding
35
DNA methylation
Target of assay
48
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
62
November, 2017
22
July, 2019
21
August, 2017
16
November, 2018
3
October, 2019
1
November, 2020
Available data
3212
bam
3019
bigWig
1688
bed narrowPeak
1532
tsv
1355
fastq
963
bigBed narrowPeak
392
tagAlign
309
bed broadPeak
272
bigBed broadPeak
262
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
307
Homo sapiens
Biosample type
195
tissue
60
cell line
51
primary cell
1
in vitro differentiated cells
Organ
82
kidney
66
liver
40
brain
38
heart
37
limb
37
musculature of body
28
epithelium
19
vasculature
18
ureter
blood vessel
13
pancreas
12
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
307
AMP
Genome assembly (visualization)
272
GRCh38
269
hg19
Lab
307
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
tar
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
307 results
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DNase-seq
ChIP-seq
RRBS
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 41 more…
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
1
13
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
astrocyte of the cerebellum
1
2
cardiac muscle cell
1
1
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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