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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
4
RRBS
2
DNase-seq
2
WGBS
Assay category
77
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
23
July, 2019
21
August, 2017
16
November, 2018
9
October, 2019
1
November, 2020
Available data
674
bam
611
fastq
606
bigWig
455
bed narrowPeak
354
bigBed narrowPeak
163
tagAlign
111
bed broadPeak
89
tsv
79
bigBed broadPeak
33
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
3
tar
Organism
85
Homo sapiens
Biosample type
58
cell line
21
primary cell
5
tissue
1
in vitro differentiated cells
Organ
59
liver
6
brain
4
epithelium
4
vasculature
3
connective tissue
2
adipose tissue
2
blood vessel
2
musculature of body
Project
85
AMP
Genome assembly (visualization)
83
hg19
65
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
RRBS
DNase-seq
WGBS
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
1
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
tissue
adipose tissue
2
skeletal muscle tissue
2
liver
1
in vitro differentiated cells
adipocyte
1
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