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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
11
DNase-seq
1
FAIRE-seq
1
RRBS
1
WGBS
Assay category
32
DNA binding
12
DNA accessibility
2
DNA methylation
Target of assay
30
histone
30
histone modification
19
broad histone mark
11
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
May, 2019
33
October, 2019
7
June, 2019
4
November, 2017
2
July, 2019
Available data
135
bam
116
bigWig
94
bed narrowPeak
68
tsv
44
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
46
Homo sapiens
Biosample type
24
tissue
22
primary cell
Organ
361
liver
104
brain
104
kidney
pancreas
87
heart
79
limb
78
epithelium
54
blood
54
bodily fluid
46
vasculature
45
musculature of body
41
blood vessel
31
connective tissue
26
nerve
22
artery
18
ureter
15
spleen
13
vein
12
adipose tissue
7
eye
1
pericardium
Project
46
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
46 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
RRBS
WGBS
tissue
tibial artery
18
2
coronary artery
2
aorta
1
ascending aorta
1
primary cell
endothelial cell of umbilical vein
10
2
1
choroid plexus epithelial cell
2
1
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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