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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
WGBS
15
RRBS
3
Hi-C
Assay category
32
DNA methylation
3
3D chromatin structure
Date released
19
July, 2019
7
November, 2018
6
August, 2017
3
October, 2022
Available data
3248
bam
3038
bigWig
bed narrowPeak
1575
tsv
1358
fastq
938
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
195
bed bed3+
153
zippedFastqFolder
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
35
Homo sapiens
Biosample type
24
tissue
10
primary cell
1
cell line
Organ
9
epithelium
9
pancreas
8
heart
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
32
AMP
3
HPAP
Genome assembly (visualization)
18
hg19
17
GRCh38
Lab
32
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
adrenal gland
kidney
BIOSAMPLE
ASSAY
35 results
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WGBS
RRBS
Hi-C
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 10 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
pancreatic acinar cell
1
+ See 5 more…
cell line
HepG2
1
See all biosamples
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