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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
8
WGBS
3
Hi-C
Assay category
23
DNA methylation
3
3D chromatin structure
Date released
23
July, 2019
3
October, 2022
Available data
3368
bam
3144
bigWig
1775
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
270
bed bed3+
151
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
26
Homo sapiens
Biosample type
14
tissue
12
primary cell
Organ
9
epithelium
8
heart
5
pancreas
4
kidney
2
brain
2
musculature of body
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
limb
1
liver
1
pericardium
Project
23
AMP
3
HPAP
Genome assembly (visualization)
18
hg19
8
GRCh38
Lab
23
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
files.file_type!
fastq
lab.title!
Struan F.A. Grant, CHOP
month_released!
May, 2022
BIOSAMPLE
ASSAY
26 results
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RRBS
WGBS
Hi-C
tissue
heart left ventricle
1
2
heart right ventricle
2
aorta
1
brain
1
heart
1
+ See 6 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 7 more…
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