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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
5
Hi-C
Assay category
19
DNA methylation
5
3D chromatin structure
Date released
19
July, 2019
4
August, 2017
1
October, 2019
Available data
bam
3122
bigWig
1711
bed narrowPeak
1477
tsv
1358
fastq
1042
bigBed narrowPeak
374
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
24
Homo sapiens
Biosample type
14
primary cell
9
tissue
1
cell line
Organ
8
epithelium
5
brain
4
kidney
3
liver
3
musculature of body
3
pancreas
3
vasculature
2
blood vessel
2
connective tissue
2
heart
1
eye
1
pericardium
Project
24
AMP
Genome assembly (visualization)
24
hg19
1
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bam
month_released!
August, 2021
BIOSAMPLE
ASSAY
24 results
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RRBS
Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 9 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
cell line
Panc1
1
See all biosamples
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