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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
3
small RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
WGBS
Assay category
172
Transcription
3
DNA methylation
2
3D chromatin structure
Date released
144
May, 2020
10
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
1
August, 2017
1
February, 2020
1
November, 2018
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
179
Homo sapiens
Biosample type
156
tissue
17
cell line
6
primary cell
Organ
481
connective tissue
430
pancreas
403
adipose tissue
179
heart
179
liver
168
epithelium
73
vasculature
72
blood vessel
58
artery
58
bone element
29
kidney
28
brain
15
musculature of body
14
embryo
8
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
166
hg19
163
GRCh38
Lab
169
AMP-T2D consortium
10
Bing Ren, UCSD
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
179 results
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total RNA-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
tissue
liver
147
1
1
1
1
right lobe of liver
3
2
cell line
HepG2
14
1
1
1
primary cell
hepatocyte
5
1
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