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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
6
single cell RNA-seq
3
Hi-C
1
WGBS
1
pCHi-C
Assay category
67
Transcription
3
3D chromatin structure
1
DNA methylation
Date released
52
February, 2021
6
August, 2021
6
July, 2019
4
March, 2020
3
February, 2020
1
October, 2019
Available data
180
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
72
Homo sapiens
Biosample type
52
cell line
16
tissue
4
primary cell
Organ
481
connective tissue
430
pancreas
403
adipose tissue
179
heart
179
liver
168
epithelium
73
vasculature
72
blood vessel
58
artery
58
bone element
29
kidney
28
brain
15
musculature of body
14
embryo
8
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
thymus
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
61
hg19
59
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
thymus
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
aorta
1
4
1
1
1
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
coronary artery
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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