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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
15
RRBS
8
WGBS
Assay category
64
DNA accessibility
23
DNA methylation
Date released
64
August, 2021
23
July, 2019
Available data
2950
bam
2744
bigWig
1804
bed narrowPeak
fastq
1199
tsv
1032
bigBed narrowPeak
390
tagAlign
bed broadPeak
283
bigBed broadPeak
267
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
87
Homo sapiens
Biosample type
78
tissue
9
primary cell
Organ
68
kidney
8
heart
6
epithelium
2
brain
2
musculature of body
2
pancreas
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
limb
1
liver
1
pericardium
Project
87
AMP
Genome assembly (visualization)
72
GRCh38
15
hg19
Lab
64
Katalin Susztak, Upenn
23
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bed broadPeak
fastq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
87 results
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Clear Filters
ATAC-seq
RRBS
WGBS
tissue
kidney
64
1
heart left ventricle
1
2
heart right ventricle
2
aorta
1
brain
1
+ See 6 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
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