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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
single cell RNA-seq
49
WGBS
39
ATAC-seq
21
snATAC-seq
15
RRBS
Assay category
64
DNA methylation
60
DNA accessibility
51
Transcription
Date released
134
May, 2022
23
July, 2019
18
September, 2020
Available data
3272
bam
3072
bigWig
1720
bed narrowPeak
1600
tsv
fastq
945
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
175
Homo sapiens
Biosample type
161
primary cell
14
tissue
Organ
86
epithelium
82
pancreas
8
heart
4
kidney
2
brain
2
musculature of body
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
limb
1
liver
1
pericardium
Project
152
HPAP
23
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
152
Klaus Kaestner, Upenn
23
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
month_released!
May, 2019
BIOSAMPLE
ASSAY
175 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
51
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 8 more…
tissue
heart left ventricle
2
1
heart right ventricle
2
aorta
1
brain
1
heart
1
+ See 6 more…
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