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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
17
RRBS
Assay category
69
DNA methylation
60
DNA accessibility
52
Transcription
Date released
134
May, 2022
19
September, 2020
15
July, 2019
7
November, 2018
6
August, 2017
Available data
3132
bam
2896
bigWig
1626
bed narrowPeak
1383
tsv
1314
fastq
948
bigBed narrowPeak
392
tagAlign
292
bed broadPeak
255
bigBed broadPeak
243
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
181
Homo sapiens
Biosample type
162
primary cell
18
tissue
1
cell line
Organ
86
epithelium
86
pancreas
heart
4
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
153
HPAP
28
AMP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
153
Klaus Kaestner, Upenn
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
April, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
181 results
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Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac muscle cell
1
+ See 8 more…
tissue
pancreas
2
1
adipose tissue
2
body of pancreas
2
skeletal muscle tissue
2
spleen
2
+ See 7 more…
cell line
HepG2
1
See all biosamples
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