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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
50
WGBS
39
ATAC-seq
21
snATAC-seq
4
RRBS
Assay category
60
DNA accessibility
54
DNA methylation
52
Transcription
Date released
134
May, 2022
July, 2019
19
September, 2020
7
November, 2018
6
August, 2017
Available data
3310
bam
3084
bigWig
1810
bed narrowPeak
1534
tsv
1358
fastq
1040
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
166
Homo sapiens
Biosample type
154
primary cell
11
tissue
1
cell line
Organ
84
pancreas
80
epithelium
2
adipose tissue
2
connective tissue
2
liver
2
musculature of body
2
spleen
Project
153
HPAP
13
AMP
Genome assembly (visualization)
9
GRCh38
4
hg19
Lab
153
Klaus Kaestner, Upenn
13
AMP-T2D consortium
month_released!
July, 2019
organ_slims!
esophagus
BIOSAMPLE
ASSAY
166 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
skeletal muscle myoblast
1
tissue
adipose tissue
2
body of pancreas
2
pancreas
2
skeletal muscle tissue
2
spleen
2
+ See 1 more…
cell line
HepG2
1
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