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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15RRBS
  • 13WGBS
Assay category
  • 28DNA methylation
Date released
  • 23July, 2019
  • 5November, 2018
Available data
  • 2590bam
  • 2477bigWig
  • 1502tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 450fastq
  • 359tagAlign
  • 234bed broadPeak
  • 222bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 28Homo sapiens
Biosample type
  • 18tissue
  • 9primary cell
  • 1cell line
Organ
  • 8heart
  • 6epithelium
  • 4kidney
  • 4pancreas
  • 2brain
  • 2liver
  • 2musculature of body
  • 2spleen
  • 2vasculature
  • 1blood vessel
  • 1connective tissue
  • 1eye
  • 1limb
  • 1pericardium
Project
  • 28AMP
Genome assembly (visualization)
  • 15hg19
  • 13GRCh38
Lab
  • 28AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

28 results

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RRBS
WGBS
tissue
heart left ventricle12
body of pancreas2
heart right ventricle2
spleen2
aorta1
primary cell
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
hepatocyte1
cell line
HepG21
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