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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
2
DNase-seq
Assay category
15
DNA binding
2
DNA accessibility
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
November, 2017
15
August, 2017
2
October, 2019
Available data
2820
bam
2675
bigWig
1562
tsv
1307
bed narrowPeak
1007
fastq
626
bigBed narrowPeak
320
tagAlign
bed bed3+
174
bed broadPeak
153
zippedFastqFolder
143
bigBed broadPeak
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
17
Homo sapiens
Biosample type
16
primary cell
1
in vitro differentiated cells
Organ
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
connective tissue
Project
17
AMP
Genome assembly (visualization)
17
hg19
13
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent assembly
files.file_type!
bed bed3+
month_released!
November, 2017
organ_slims!
embryo
kidney
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
in vitro differentiated cells
adipocyte
1
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