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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
46
transcription factor
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
62
November, 2017
2
October, 2019
Available data
996
bam
915
bigWig
731
fastq
587
bed narrowPeak
432
bigBed narrowPeak
326
tsv
89
tagAlign
85
bed broadPeak
85
bigBed broadPeak
80
zippedFastqFolder
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
4
tar
3
cool
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
64
Homo sapiens
Biosample type
58
cell line
6
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
connective tissue
0
spleen
Project
64
AMP
Genome assembly (visualization)
64
hg19
48
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
13
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
cell line
HepG2
58
primary cell
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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