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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 2DNase-seq
Assay category
  • 79DNA binding
  • 2DNA accessibility
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 64November, 2017
  • 15August, 2017
  • 2October, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 81Homo sapiens
Biosample type
  • 58cell line
  • 22primary cell
  • 1in vitro differentiated cells
Organ
  • 58liver
  • 6brain
  • 6epithelium
  • 6vasculature
  • 4blood vessel
  • 2vein
  • 1connective tissue
Project
  • 81AMP
Genome assembly (visualization)
  • 81hg19
  • 63GRCh38
Lab
  • 81AMP-T2D consortium
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

81 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG258
primary cell
skeletal muscle myoblast131
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
endothelial cell of umbilical vein2
in vitro differentiated cells
adipocyte1
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