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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
79
ChIP-seq
Assay category
197
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
64
November, 2017
14
August, 2017
9
October, 2019
8
November, 2018
Available data
2799
bam
2599
bigWig
1742
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
276
Homo sapiens
Biosample type
174
tissue
59
cell line
43
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
276
AMP
Genome assembly (visualization)
258
GRCh38
254
hg19
Lab
276
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
zippedFastqFolder
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
276 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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