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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
15
DNase-seq
Assay category
75
DNA binding
15
DNA accessibility
Target of assay
48
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
June, 2019
62
November, 2017
15
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2999
bam
2814
bigWig
1532
tsv
1483
bed narrowPeak
1355
fastq
758
bigBed narrowPeak
392
tagAlign
txt
153
zippedFastqFolder
127
bed broadPeak
90
bigBed broadPeak
80
bed bed3+
64
xls
35
bed bedMethyl
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
90
Homo sapiens
Biosample type
59
cell line
19
primary cell
11
tissue
1
in vitro differentiated cells
Organ
61
liver
10
vasculature
blood vessel
8
brain
8
epithelium
4
limb
4
vein
3
connective tissue
3
pancreas
2
artery
2
nerve
1
adipose tissue
1
spleen
Project
90
AMP
Genome assembly (visualization)
90
hg19
74
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed bedMethyl
txt
month_released!
June, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
choroid plexus epithelial cell
2
osteoblast
1
tissue
body of pancreas
2
brain
2
liver
2
tibial nerve
2
omental fat pad
1
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in vitro differentiated cells
adipocyte
1
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