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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
DNase-seq
19
ChIP-seq
Assay category
191
DNA accessibility
19
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
180
June, 2019
14
August, 2017
6
November, 2017
5
November, 2018
5
October, 2019
Available data
2099
bam
1963
bigWig
1289
bed narrowPeak
948
tsv
792
fastq
644
bigBed narrowPeak
290
tagAlign
246
bed broadPeak
232
bed bed3+
210
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
bigBed bedMethyl
19
bedpe bed3+
19
hic
7
csv
5
bed bed3
3
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
210
Homo sapiens
Biosample type
171
tissue
38
primary cell
1
cell line
Organ
78
kidney
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
vein
2
adipose tissue
2
nerve
1
spleen
Project
210
AMP
Genome assembly (visualization)
208
GRCh38
188
hg19
Lab
210
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bigBed bedMethyl
organ_slims!
connective tissue
liver
vein
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 12 more…
cell line
Panc1
1
See all biosamples
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