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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
DNase-seq
8
ChIP-seq
Assay category
48
DNA accessibility
8
DNA binding
Target of assay
5
histone
5
histone modification
3
RNA binding protein
3
narrow histone mark
3
transcription factor
2
broad histone mark
Date released
42
June, 2019
6
November, 2017
6
October, 2019
2
November, 2018
Available data
594
bam
545
bigWig
375
bed narrowPeak
272
fastq
223
bigBed narrowPeak
187
tsv
125
tagAlign
80
zippedFastqFolder
65
bed broadPeak
56
bigBed broadPeak
55
bed bed3+
7
bed bedMethyl
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
56
Homo sapiens
Biosample type
29
tissue
27
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
56
AMP
Genome assembly (visualization)
54
GRCh38
40
hg19
Lab
56
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
56 results
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DNase-seq
ChIP-seq
tissue
brain
14
frontal cortex
2
tibial nerve
2
Ammon's horn
1
caudate nucleus
1
+ See 9 more…
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 11 more…
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