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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 79ChIP-seq
Assay category
  • 206DNA accessibility
  • 79DNA binding
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 64November, 2017
  • 15August, 2017
  • 9November, 2018
  • 9October, 2019
  • 1November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 285Homo sapiens
Biosample type
  • 176tissue
  • 59cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 22epithelium
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 285AMP
Genome assembly (visualization)
  • 267GRCh38
  • 262hg19
Lab
  • 285AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • csv
BIOSAMPLE
ASSAY

285 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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