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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
Assay category
177
DNA accessibility
Target of assay
broad histone mark
2
histone
2
histone modification
Date released
169
June, 2019
7
October, 2019
1
November, 2020
Available data
2753
bam
2504
bigWig
1511
tsv
1286
bed narrowPeak
fastq
757
bigBed narrowPeak
247
bed broadPeak
242
bigBed broadPeak
216
bed bed3+
207
tagAlign
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
177
Homo sapiens
Biosample type
149
tissue
27
primary cell
1
cell line
Organ
78
kidney
36
limb
33
musculature of body
30
brain
30
heart
ureter
16
epithelium
11
vasculature
9
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
2
liver
2
nerve
2
vein
1
adipose tissue
Project
177
AMP
Genome assembly (visualization)
177
GRCh38
154
hg19
Lab
177
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
month_released!
August, 2017
October, 2017
organ_slims!
ureter
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
177 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 33 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
Panc1
1
See all biosamples
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