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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195DNase-seq
  • 2ChIP-seq
Assay category
  • 195DNA accessibility
  • 2DNA binding
Target of assay
  • 2broad histone mark
  • 2histone
  • 2histone modification
Date released
  • 187June, 2019
  • 9October, 2019
  • 1November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 197Homo sapiens
Biosample type
  • 167tissue
  • 29primary cell
  • 1cell line
Organ
  • 78kidney
  • 36limb
  • 33musculature of body
  • 30brain
  • 30heart
  • 18epithelium
  • 18ureter
  • 13vasculature
  • 11blood vessel
  • 7connective tissue
  • 5pancreas
  • 4artery
  • 4eye
  • 4vein
  • 2liver
  • 2nerve
  • 1adipose tissue
Project
  • 197AMP
Genome assembly (visualization)
  • 195GRCh38
  • 174hg19
Lab
  • 197AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

197 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
kidney13
muscle of leg13
brain12
primary cell
endothelial cell of umbilical vein22
cardiac fibroblast3
glomerular visceral epithelial cell2
kidney tubule cell2
astrocyte of the cerebellum1
cell line
Panc11
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