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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
DNase-seq
68
ChIP-seq
Assay category
184
DNA accessibility
68
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
169
June, 2019
56
November, 2017
14
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2885
bam
2705
bigWig
1518
bed narrowPeak
1377
tsv
1066
fastq
870
bigBed narrowPeak
385
tagAlign
289
bed broadPeak
252
bigBed broadPeak
246
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
17
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
252
Homo sapiens
Biosample type
171
tissue
55
cell line
25
primary cell
1
in vitro differentiated cells
Organ
78
kidney
59
liver
38
brain
36
limb
33
musculature of body
30
heart
epithelium
18
ureter
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
252
AMP
Genome assembly (visualization)
236
GRCh38
235
hg19
Lab
252
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
inconsistent control read length
1
inconsistent assembly
files.file_type!
hdf5
organ_slims!
epithelium
vasculature
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
252 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 4 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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