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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
16
ChIP-seq
Assay category
201
DNA accessibility
16
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
13
August, 2017
9
October, 2019
6
November, 2018
3
November, 2017
1
November, 2020
Available data
2552
bam
2384
bigWig
1426
tsv
1236
bed narrowPeak
766
fastq
593
bigBed narrowPeak
303
tagAlign
254
bed broadPeak
243
bed bed3+
217
bigBed broadPeak
161
txt
153
zippedFastqFolder
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
217
Homo sapiens
Biosample type
173
tissue
42
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
liver
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
217
AMP
Genome assembly (visualization)
214
GRCh38
194
hg19
Lab
217
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
hic
xls
organ_slims!
liver
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
217 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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