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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
DNase-seq
79
ChIP-seq
Assay category
191
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
177
June, 2019
64
November, 2017
14
August, 2017
8
November, 2018
7
October, 2019
Available data
2750
bam
2562
bigWig
1682
bed narrowPeak
1257
fastq
1112
tsv
982
bigBed narrowPeak
376
tagAlign
306
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
270
Homo sapiens
Biosample type
169
tissue
59
cell line
42
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
connective tissue
7
pancreas
4
artery
eye
4
vein
2
adipose tissue
nerve
1
spleen
Project
270
AMP
Genome assembly (visualization)
252
GRCh38
248
hg19
Lab
270
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
ibed
organ_slims!
connective tissue
eye
nerve
BIOSAMPLE
ASSAY
270 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 13 more…
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