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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
DNase-seq
2
ChIP-seq
Assay category
14
DNA accessibility
2
DNA binding
Target of assay
2
RNA binding protein
2
histone
2
histone modification
narrow histone mark
2
transcription factor
Date released
14
June, 2019
October, 2019
2
November, 2017
Available data
245
bam
236
bigWig
229
fastq
tsv
90
bed narrowPeak
80
zippedFastqFolder
52
bigBed narrowPeak
17
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
4
tagAlign
3
cool
2
hdf5
Organism
16
Homo sapiens
Biosample type
16
primary cell
Organ
78
kidney
57
liver
35
brain
33
musculature of body
32
limb
30
heart
18
ureter
16
epithelium
9
connective tissue
9
vasculature
6
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
16
AMP
Genome assembly (visualization)
16
GRCh38
10
hg19
Lab
16
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
month_released!
October, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
16 results
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DNase-seq
ChIP-seq
primary cell
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
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