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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
66
ChIP-seq
Assay category
195
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
August, 2017
November, 2018
9
October, 2019
1
November, 2020
Available data
3015
bam
2817
bigWig
1594
bed narrowPeak
1511
tsv
983
fastq
927
bigBed narrowPeak
313
tagAlign
272
bed broadPeak
261
bigBed broadPeak
231
bed bed3+
157
txt
153
zippedFastqFolder
64
xls
23
bed bedMethyl
23
bedpe bed3+
23
bigBed bedMethyl
23
hic
8
bed bed3
7
bed bedgraph
7
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
vcf
Organism
261
Homo sapiens
Biosample type
167
tissue
59
cell line
35
primary cell
Organ
78
kidney
60
liver
36
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
nerve
1
adipose tissue
Project
261
AMP
Genome assembly (visualization)
245
GRCh38
238
hg19
Lab
261
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
files.file_type!
vcf
month_released!
August, 2017
November, 2018
organ_slims!
skeleton
BIOSAMPLE
ASSAY
261 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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