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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
DNase-seq
73
ChIP-seq
Assay category
111
DNA accessibility
73
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
99
June, 2019
60
November, 2017
15
August, 2017
7
November, 2018
2
October, 2019
1
November, 2020
Available data
2375
bam
2261
bigWig
1288
bed narrowPeak
1091
tsv
881
fastq
765
bigBed narrowPeak
373
tagAlign
207
bed broadPeak
184
bigBed broadPeak
154
bed bed3+
93
txt
73
zippedFastqFolder
24
bed bedMethyl
24
bigBed bedMethyl
14
bedpe bed3+
12
bed bed3
12
hic
7
bed bedgraph
3
csv
3
tar
2
hdf5
2
ibed
1
tagAlign bed3+
1
vcf
Organism
184
Homo sapiens
Biosample type
97
tissue
58
cell line
28
primary cell
1
in vitro differentiated cells
Organ
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
vasculature
13
blood vessel
9
connective tissue
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
184
AMP
Genome assembly (visualization)
170
hg19
168
GRCh38
Lab
184
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
files.file_type!
xls
organ_slims!
kidney
pancreas
vasculature
BIOSAMPLE
ASSAY
184 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
heart left ventricle
3
+ See 25 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 6 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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