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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
11
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
11
DNA binding
6
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
broad histone mark
11
narrow histone mark
Date released
37
June, 2019
5
August, 2017
5
July, 2019
2
March, 2020
2
May, 2019
1
January, 2018
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
52
Homo sapiens
Biosample type
45
tissue
7
primary cell
Organ
592
liver
554
connective tissue
550
pancreas
425
adipose tissue
259
epithelium
167
heart
162
brain
116
kidney
112
vasculature
107
blood vessel
71
artery
58
bone element
57
limb
55
blood
55
bodily fluid
52
musculature of body
25
embryo
18
ureter
15
nerve
12
spleen
8
vein
6
eye
1
pericardium
1
pituitary gland
Project
52
AMP
Genome assembly (visualization)
51
hg19
45
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
ovary
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
52 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
2
1
skeletal muscle tissue
5
1
1
1
psoas muscle
2
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
3
1
1
skeletal muscle cell
1
1
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