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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
2
Hi-C
Assay category
6
DNA binding
2
3D chromatin structure
Target of assay
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
1
August, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
0
cool
Organism
8
Homo sapiens
Biosample type
7
cell line
1
tissue
Organ
8
epithelium
8
liver
7
pancreas
5
blood vessel
5
vasculature
4
vein
3
heart
2
musculature of body
1
kidney
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
Hi-C
cell line
HepG2
6
1
tissue
liver
1
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