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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
8
single cell RNA-seq
Assay category
8
DNA binding
8
Transcription
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
6
February, 2021
6
November, 2017
2
October, 2019
1
November, 2018
1
September, 2018
Available data
3286
bam
3054
bigWig
bed narrowPeak
1468
tsv
1356
fastq
995
bigBed narrowPeak
359
tagAlign
276
bed broadPeak
252
bigBed broadPeak
234
bed bed3+
153
zippedFastqFolder
103
txt
32
bed bedMethyl
32
bigBed bedMethyl
19
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
16
Homo sapiens
Biosample type
6
cell line
6
tissue
4
primary cell
Organ
7
liver
5
kidney
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
16
AMP
Genome assembly (visualization)
8
hg19
Lab
16
AMP-T2D consortium
Audit category:
5
audit script error
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
month_released!
August, 2021
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
16 results
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Clear Filters
ChIP-seq
single cell RNA-seq
cell line
HepG2
6
tissue
kidney
5
liver
1
primary cell
endothelial cell of umbilical vein
2
pancreatic cell
2
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