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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
7
ChIP-seq
Assay category
8
Transcription
7
DNA binding
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
narrow histone mark
Date released
6
February, 2021
5
November, 2017
2
October, 2019
1
November, 2018
1
September, 2018
Available data
2987
bam
2729
bigWig
1600
tsv
1388
bed narrowPeak
1248
fastq
bigBed narrowPeak
293
bed broadPeak
271
bigBed broadPeak
260
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
15
Homo sapiens
Biosample type
6
tissue
5
cell line
4
primary cell
Organ
6
liver
5
kidney
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
15
AMP
Genome assembly (visualization)
7
hg19
Lab
15
AMP-T2D consortium
Audit category:
5
audit script error
Audit category:
1
inconsistent control read length
files.file_type!
bigBed narrowPeak
target.investigated_as!
narrow histone mark
nucleotide modification
BIOSAMPLE
ASSAY
15 results
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single cell RNA-seq
ChIP-seq
tissue
kidney
5
liver
1
cell line
HepG2
5
primary cell
endothelial cell of umbilical vein
2
pancreatic cell
2
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