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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
57
ChIP-seq
8
single cell RNA-seq
Assay category
204
DNA accessibility
57
DNA binding
8
Transcription
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
55
November, 2017
August, 2017
10
November, 2018
9
October, 2019
6
February, 2021
1
November, 2020
1
September, 2018
Available data
2757
bam
2517
bigWig
1511
tsv
1296
bed narrowPeak
1013
fastq
863
bigBed narrowPeak
267
bed broadPeak
261
bigBed broadPeak
233
bed bed3+
168
tagAlign
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
269
Homo sapiens
Biosample type
182
tissue
53
cell line
34
primary cell
Organ
83
kidney
58
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
269
AMP
Genome assembly (visualization)
246
GRCh38
238
hg19
Lab
269
AMP-T2D consortium
Audit category:
5
audit script error
4
inconsistent ontology term
Audit category:
8
inconsistent control read length
month_released!
August, 2017
target.investigated_as!
narrow histone mark
nucleotide modification
BIOSAMPLE
ASSAY
269 results
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DNase-seq
ChIP-seq
single cell RNA-seq
tissue
heart
18
kidney
13
5
muscle of arm
17
brain
14
muscle of leg
13
+ See 39 more…
cell line
HepG2
52
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 18 more…
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