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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
5
Hi-C
2
ChIP-seq
Assay category
195
DNA accessibility
5
3D chromatin structure
2
DNA binding
Target of assay
2
broad histone mark
2
histone
2
histone modification
Date released
187
June, 2019
10
October, 2019
4
July, 2019
1
November, 2020
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1599
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
202
Homo sapiens
Biosample type
167
tissue
33
primary cell
2
cell line
Organ
78
kidney
36
limb
33
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
13
blood vessel
8
connective tissue
6
pancreas
4
artery
4
eye
4
vein
3
liver
2
nerve
1
adipose tissue
Project
202
AMP
Genome assembly (visualization)
196
GRCh38
179
hg19
Lab
202
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed bed3
fastq
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
202 results
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Clear Filters
DNase-seq
Hi-C
ChIP-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 18 more…
cell line
Panc1
1
1
See all biosamples
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