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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
7
Hi-C
Assay category
7
3D chromatin structure
7
DNA accessibility
Date released
4
June, 2019
3
October, 2022
2
November, 2018
2
November, 2019
1
March, 2019
1
March, 2020
1
October, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
14
Homo sapiens
Biosample type
9
tissue
3
primary cell
2
cell line
Organ
79
kidney
65
liver
38
brain
36
limb
35
musculature of body
33
heart
28
epithelium
20
vasculature
18
ureter
16
blood vessel
14
pancreas
9
connective tissue
6
vein
4
artery
4
eye
2
adipose tissue
2
nerve
1
spleen
Project
11
AMP
3
HPAP
Genome assembly (visualization)
12
hg19
7
GRCh38
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
organ_slims!
small intestine
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
14 results
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Clear Filters
DNase-seq
Hi-C
tissue
body of pancreas
4
pancreas
2
1
islet of Langerhans
2
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
Panc1
1
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